CBI Research and Development & Other Tools

Quick Links

• Gene Expression Regulation
• Bioinformatics Infrastructure
• Genome Analysis and Comparison
• Protein Families of Biomedical Signification
• Others

Gene Expression Regulation

• Trans-SAMAP -- Trans-Natural antisense transcripts database new!
• HomeoDB -- Homeobox Gene Database new!
• PlantTFDB -- Plant Transcription Factor Database new!
• CPC -- Coding Potential Calculator new!
• NATsDB -- Natural antisense transcripts database new!
• KOBAS -- KEGG Orthology Annotation System
• CEAS -- Cis-regulatory Element Annotation System
• GBA -- EST-based gene expression profiling and analysis platform
• TiProD -- Tissue-Specific Promoter Database
• RStGEP -- Organ-specific expression profiling of early development of rice stamen
• DEPD -- The Differentially Expressed Protein Database
• GSDS -- Gene Structure Display Server

Bioinformatics Infrastructure

• WebLab -- Your lab on the web updated!
• ABCGrid -- Application of Bioinformatics Computing Grid
• BioLand -- BioLand Linux Project

Genome Analysis and Comparison

• ColinearScan -- Dynamic programming for colinearity analysis of genomes new!
• CVTree -- Composition Vector Tree constructs phylogeny trees
• PGAAS -- prokaryotic genome assembly assistant system
• PSMY -- Potential Synergy mapping of Yeast Genes

Protein Families of Biomedical Signification

• FAS -- Function and Active Site Search
• SynDB -- Synapse DataBase
• SPD -- Secreted Protein database
• PAK -- Proteome Annotation Knowledgebase
• PNDIS -- Protein Neurtoxins Database Inquiry System

Others

• Proteomics Toolkit -- Proteomics tools at ExPASy
• MRS at CBI -- Database query systems which is similar with SRS new!
• CVTree -- Composition Vector Tree (CVTree) constructs phylogeny trees
• RDV -- The database about Rice dwarf phytoreovirus
• RDFolder -- Prediction of RNA secondary structure
• Loops -- The database about protein loop classification
• Domains -- The database about Protein Domain